Check for Taxonomic Coverage test — test_taxonomic

'test_taxnomomic_cov()` checks whether taxonomic coverage element is present in metadata. It does not perform any validation of taxonomic coverage information. If taxonomic coverage is present, the test passes. If it is absent, the test fails with a warning.

Usage

test_taxonomic_cov(metadata = load_metadata(directory))

Arguments

metadata: The metadata object returned by load_metadata. If parameter not provided, defaults to calling load_metadata in current project directory.

Value

Invisibly returns metadata.

Examples

meta <- load_metadata(DPchecker_example("BICY_veg"))
#> Data are provided for example use only. Do not assume that they are complete, accurate, or up to date.
test_taxonomic_cov(meta)
#> ✔ Metadata contains taxonomic coverage element.